PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G08900.6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family E2F/DP
Protein Properties Length: 449aa    MW: 48930.9 Da    PI: 4.6804
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G08900.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.47.5e-26110175171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      r+++sL+llt+kf++ll+++++gi++ln+++k L   dv  ++RRiYDi+NVLe+ +liekk kn+irw+g
  LPERR04G08900.6 110 RYDNSLGLLTKKFINLLKQAQDGILDLNDASKIL---DV--RKRRIYDITNVLEGTGLIEKKLKNRIRWRG 175
                      689*******************************...**..9***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.2E-27107176IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.3E-32110175IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-16110173IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.0E-22112175IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF164219.1E-23182268IPR032198E2F transcription factor, CC-MB domain
SuperFamilySSF1440747.32E-24184270No hitNo description
CDDcd146604.77E-34184270No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAGGGRAPAA QHIVQSVQRS VPMPPARMRF AAPGDYHRFP LPPSPATASR DGGEMEEGIV  60
IKSPTPLKRK TPCGDSEAAI SSEHTMTNPG LTEGDGSSPG NPSTPASSSR YDNSLGLLTK  120
KFINLLKQAQ DGILDLNDAS KILDVRKRRI YDITNVLEGT GLIEKKLKNR IRWRGSDDSG  180
TNFDSDVSCL QEKMEELTED ESNHRWLFVT EDDIKGLPCF QNEALIAIKG PRGTTLEVPD  240
PDEAGDYVQR RYRIVLRSTM GPIDLYLVSQ FKKMEELGDT ATPPRHASVP EPPSVETEAE  300
QSSKQNMFLN VQQDIQKAPE LNASHAFRGM KKITPSDVDA DTDYWLLTDG DISITDMWTT  360
ARAYLIDRWI DQSPPFLIFP IQFATTGVSA TVGGNLIGDA ALCAAYASAN VPTFPPVSPV  420
AIPTCNKKSN QATAGEPEIG KQEEEDGDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-23105175273PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145167RKRRIYDITNVLEGTGLIEKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0675811e-106AK067581.1 Oryza sativa Japonica Group cDNA clone:J013113N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637107.10.0PREDICTED: transcription factor E2FA isoform X2
SwissprotQ9FV711e-92E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A0D9W4S90.0A0A0D9W4S9_9ORYZ; Uncharacterized protein
STRINGBGIOSGA015126-PA1e-159(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.36e-92E2F transcription factor 1